PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g002870.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 508aa    MW: 55968.9 Da    PI: 5.3524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g002870.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.6e-16302348455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  Er+RRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Sopen06g002870.2 302 VHNLSERKRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 348
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-20296365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.012298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.01E-17301352No hitNo description
Gene3DG3DSA:4.10.280.103.9E-20302356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-13302348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-18304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MNYCVVPDFK MDDDYYDIPS AIFNKKSTIA DEEIMELVWQ NGEVIMQSQN QRSVRKSNLF  60
PEQSAVEQTV AVSAPLYMQE DEMNSWLQSP LDDSSFDDFL NTTPSCDAVT SAAAPQGEIG  120
TSKVEIRPPL VPPCSRPIRC TEGELPHRLQ NFGHFSRLSG EAILRNGTTS SSGHSVRAST  180
IVDSNETPVA ARVSENVTPV TAMNVRGREL TATTSGGREV TMACELALTA STSGSGGSVS  240
ARAEPPQPSH MEADTAVDDR KRKSRESDDN EGQSEDVEYE FADARKQVRS STSAKKSRAA  300
EVHNLSERKR RDRINEKMKA LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMATGCSM  360
VPMMYPGIPQ YMPTMGMNMS MGMDMKMGRN RPIISYPPLM PGTAMQNAAA AAQMAPQYPL  420
PAYHLPPFPA PDPSRIPVAN HPDHPRLNSH VGHNISQPRL PNFSDPYYQY FGLQQAQLML  480
PQNQEVEQLS SSKLNSCIEG SAGNHQSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306311ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079220.10.0PREDICTED: transcription factor PIF1-like isoform X1
RefseqXP_015079221.10.0PREDICTED: transcription factor PIF1-like isoform X2
TrEMBLK4C3I30.0K4C3I3_SOLLC; Uncharacterized protein
STRINGSolyc06g008030.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.36e-47phytochrome interacting factor 3-like 5